Protein Analysis Online Services Bioinformatics Biology

An experimental bioinformatics server. Classifies protein sequences as homodimers or non-homodimers. Applications: metabolic reconstruction, protein structure and function assignment, and drug-design.

• BioInfoBank Meta Server - Offers a gateway to well-benchmarked protein structure and bioinformatics function prediction methods. Structural models collected from the bioinformatics predictions servers are assessed using the powerful 3D-jury bioinformatics consensus approach.
• Quaternary Structure Prediction - An experimental bioinformatics server. Classifies protein sequences as homodimers or online services non-homodimers. Applications: metabolic reconstruction, protein structure and function assignment, and online services drug-design.
• The ProCKSI Server: Protein Comparison, Knowledge, Similarity and Information - ProCKSI is a decision support system for protein protein analysis structure bioinformatics comparison. It provides tools for visualising, analysing, protein analysis clustering and bioinformatics comparing results.
• MODBASE - A database of annotated comparative protein structure models. protein analysis The protein analysis database includes fold assignments and alignments as protein analysis well as protein analysis information about putative ligand binding sites, protein analysis SNP annotation, and protein analysis protein-protein interactions.
• Wurst - A protein threading server using sequence profiles combined protein analysis with protein analysis a protein sequence to structure compatibility function protein analysis based on protein analysis Bayesian statistics.
• Swiss-Model - Automated comparative protein modelling server to make protein modelling accessible online services to biochemists and molecular biologists worldwide - from GlaxoWellcome Experimental online services Research, Geneva, Switzerland.
• JAligner - Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
• PDB Ligand Environment - Ligand search engine to EBI Macromolecule Structure Database. Provides PDB ID codes with further visualization and statistics charts.
• Entelechon Backtranslation tool - Online backtranslation tool for translating a protein sequence online services into online services a DNA sequence. The codon usage can online services be downloaded online services from a database and adjusted manually online services for each amino online services acid, if required. online services Java applet.
• Protein Structure Prediction Server (PSIPRED) - 3D protein structure prediction from amino acid sequence. Includes bioinformatics MEMSAT for transmembrane topology prediction, GenTHREADER and mGenTHREADER for fold bioinformatics recognition.
• 3D-PSSM Fold Recognition - Combines sequence and structural information for predicting the protein analysis structure protein analysis and/or function of your protein sequence, and protein analysis can detect protein analysis remote homologies beyond PSI-Blast.
• Molecules To Go - Search engine for visualizing 3-D biomolecular models. From protein analysis the Center for Molecular Modeling, NIH, Maryland.
• NUMODs Motifs Finder - Finds Nuclease-Associated Modular DNA-binding Domains (NUMODs) in protein protein analysis sequences
• Isoelectric Point Estimator - Calculated using the FASTA amino acid sequence and pKa values for. Allows consideration of post-translational modifications.
• Swiss-Pdb Viewer - User-friendly interface allowing analysis of several proteins at online services once, including superimposition to deduce structural alignments, and online services compare active sites. From GlaxoWellcome Experimental Research, Geneva, online services Switzerland.
• UniProt - UniProt (Universal Protein Resource) is a catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR.
• SSM - Provides interactive service for matching protein structures in bioinformatics 3D and online services looking for structural homologues in PDB bioinformatics and SCOP databases, as online services well as in user-uploaded bioinformatics sets of structures.
• ProtFun - Ab initio predictions of protein function from protein protein analysis sequence. The method works by integrating various predicted protein analysis post-translational and localizational aspects of the proteins submitted.
• EMBL Bioinformatic Harvester - Collection of human (swall) proteins, crossreferences to major bioinformatics prediction servers. Supported predictions from: smart, string, blast, bioinformatics swall, mapview, sosui, ipsort and ncbi conserved domains.
• TRANSFAC-The Transcription Factor Database - A compilation of transcriptional regulatory protein factors and online services their cognate gene promoter elements along with DNA online services sequence search and analysis programs - from GBF, online services Braunschweig, Germany.
• Protonet - Provides automatic hierarchical classification of proteins sequences.
• Munich Information Center for Protein Sequences (MIPS) - Bioinformatics research group offering organism specific information (Yeast, protein analysis Cress) protein analysis as well as search tools for public protein analysis databases.
• Jpred - Secondary protein structure prediction from amino acid sequence; based on online services a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, online services ZPRED, and MULPRED.
• InterPro - The Integrated Resource of Protein Domains and Functional Sites. - A database built from Pfam, PRINTS and PROSITE.
• The Protein Information Resource - In collaboration with the Munich Information Center for bioinformatics Protein Sequences (MIPS) and the Japanese International bioinformatics Protein Sequence Database (JIPID) maintains the PIR-International Protein bioinformatics Sequence Database. An annotated, and non-redundant set of bioinformatics protein se
• TopMatch: Protein Structure Comparison - Public web service for the alignment and superposition of protein protein analysis structures and the instant visualization of structural similarities.
• Phyre- Protein Homology/analogY Recognition Engine - Phyre is a free for academics service for protein analysis predicting bioinformatics the 3-dimensional structure of a protein amino protein analysis acid sequence.
• Proteomics Tools - Online software for protein analysis from the Swiss bioinformatics Institute of Bioinformatics (SIB).
• DisEMBL - Computational tool for sequence based prediction of intrinsic online services protein disorder and unstructured regions within a protein.
• Melanie II 2-D Analysis Software - Powerful, state-of-the-art, 2-D analysis software package with user-friendly interface from online services the Swiss Institute of Bioinformatics.
• SWISS-PROT + TrEMBL - The SWISS-PROT database contains high-quality annotation, is non-redundant protein analysis and online services cross-referenced to many other databases. SWISS-PROT is protein analysis accompanied by online services TrEMBL, a computer-annotated supplement, which contains protein analysis the translations of online services all coding sequences (CDS) pr
• Dali server - The Dali server is a network service for comparing protein protein analysis structures in 3D.
• Molecular Biology Tools Online - Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome bioinformatics (translate nucleotide bioinformatics sequences into peptides), and SeqScanGraph (graph bioinformatics melting temperature along nucleotide bioinformatics chain).
• MSDmotif - Service for protein sequence motifs detection. Search based on the protein analysis small 3D motifs defined by J.Milner-White.
• iMolTalk - Provides protein structure information such as structural alignment, residue contact, online services protein-protein interfaces, contact maps and general information extraction.
• MultiProt - Service for detecting the multiple structural alignments of proteins. Uses the common geometrical cores between the input molecules. Does not require that all the input molecules participate in the alignment.
• Combinatorial Extension of Polypeptides - Method for finding 3-D similarities in protein structures from the online services UCSD Supercomputer Center.
• PFP: Automated Function Prediction Server - Accepts a single query protein sequence and returns protein analysis the most probable Gene Ontology functional annotations in protein analysis each of the three ontologies.
• COLORADO3D - Service to aid visualisation of potential errors in online services protein bioinformatics structures. Free for academic users.
• ESyPred3D - ESyPred3D is an automated homology modeling program getting online services benefit online services of the increased alignment performances of a online services new alignment online services strategy using neural networks. The final online services three dimensional structure online services is built using the modeling online services package MODELLER.
• 3D-JIGSAW - Automated comparative (homology) protein modelling, including an interactive bioinformatics mode which highlights known domains and allows users bioinformatics to select and align templates.
• ConSurf - Identifies functionally important regions on the surface of online services a protein or domain, of known three-dimensional (3D) online services structure using the phylogenetic relations between close sequence online services homologues.
• ELM - Functional Sites in Proteins - Predicts functional sites (linear motifs) in proteins, such online services as online services post-translational modification sites, ligand motifs, and targeting online services signals. Context-based online services rules and logical filters are applied online services to improve predictions.
• PredictProtein Server - Most widely used server for analysing protein sequences, protein analysis searching bioinformatics protein databases, and predicting protein structure - protein analysis from Columbia bioinformatics Univ.

   MySQL - Cache Direct