Software Genetics Biology

Designed to create a database of mutation loci, to make this information available to as many people as possible. No longer being maintained.

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• Gene Array Analyzer Software - Software for the efficient management, analysis and visualization genetics of large amounts of gene expression data.
• PeakTrace Basecaller - Software for base and quality scoring ABI DNA genetics sequencing traces. biology Works with all ABI DNA sequencers genetics including the ABI 377, biology ABI 310, ABI 3700, genetics ABI 3100, ABI 3130 and ABI biology 3730.
• Genetic Linkage Analysis - Offers links and other resources for genetic analysis biology software from biology the Rockefeller University.
• Random Genetic Optimization - Genetic algorithms are a new approach to modeling biology based on genetics the evolution theory in biology and biology use concepts such as genetics population, descendant, parents, mutations, biology chromosomes, genes, etc.
• STRand - Open-source program, provided by Davis\\' Veterinary Genetics Lab at the University of California, to automate or speed up the analysis of DNA fragment length polymorphism samples.
• Mutation Explorer - Software to automatically detect mutations from DNA sequence genetics data, including homozygous, heterozygous, insertion and deletion.
• Broad Institute Genetics Software - Offers a wide range of software for genome genetics sequence analysis, biology genetic variation, linkage analysis, expression analysis, genetics and PCR primer selection.
• Synopsis - Commercial Windows software for visualization and annotation of genetics genomic data.
• CellProfiler - Open source image analysis software designed for biologists genetics without training software in computer vision or programming to genetics quantitatively measure phenotypes from software thousands of images automatically.
• Genex Open Source Gene Expression Database - Genex is an open source database for storing, biology processing, and genetics analyzing gene expression microarray data.It is biology intended for local installation genetics by medium sized laboratories biology with some system administration support. No genetics activity since biology 2003.
• BioConstructor Molecular Cloning Software - BioConstructor is a bioinformatics solution focussing on molecular software cloning. Runs on Windows, Mac OS X, Linux.
• Gene Expression Open Source System - Open source database and analysis package used to software store and analyze gene expression data. Includes microarray software center workflow management, and researcher tools to analyze software final data.
• Seqool - Free Windows software tool for the analysis of software DNA and genetics RNA sequences. It includes several sequence software statistics and a comprehensive genetics set of signal search software methods.
• HyPhy: Hypothesis Testing Using Phylogenies - Free multiplatform software package intended to perform maximum likelihood analyses of genetic sequence data.
• Binary State Pattern Clustering - BSPC is a method for pattern discovery in gene expression microarray data, that makes use of a perspective that interprets gene activity as being in two or more discrete functional states.
• MuStaR Sequence Variant Database Software - Designed to create a database of mutation loci, to make software this information available to as many people as possible. No software longer being maintained.
• CounterTrace II DNA Sequencing - Software and reagent for improving the quality and software read length biology of DNA sequence traces collected on software the ABI 3730 DNA biology sequencer.
• OpenBiomind - OpenBiomind is an open source toolkit for analysis biology of gene genetics expression, SNP and other biological datasets biology using advanced machine learning genetics and pattern mining techniques, biology and includes traditional clustering, hybrid clustering, genetics and other biology techniques.
• Alice Software - Database system to build and publish synonymised checklists software of species. biology Species descriptions include pre-established fields software and detailed descriptions employing biology any number of user-defined software fields.
• The Sequence Manipulation Suite - The Sequence Manipulation Suite is a collection of JavaScript programs biology for generating, formatting, and analyzing short DNA and protein sequences. biology It is commonly used by molecular biologists, for teaching purposes, biology and for program and algorithm testing.
• Alternative Splice Site Predictor - ASSP predicts putative alternative exon isoform, cryptic, and biology constitutive splice sites of internal (coding) exons.
• Progeny Software - Supply pedigree drawing and genetic data management software genetics for genetic research with a built-in customizable relational genetics database.
• MapMakerDrawer - Program that draws chromosome maps (as EMF files) software using the genetics output of MapMaker EXP. Delphi source software code is freely available genetics upon request. The software software is available under the MIT licence.
• PyMoods - A software application for visualizing genomic data. genetics Can be used to analyze and display relations genetics between complete genomes, genomic fragments, proteins, ESTs, full genetics length cDNAs, and gene expression data.
• GENtle - GPL software for viewing and editing DNA and amino acid biology sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows biology version is available for download (English and German).
• GeneSifter - Web-based microarray analysis system that combines data management software and analytical functions with integrated, current gene annotation software from public databases. Product overview in pdf format.
• CREME: Cis-REgulatory Module Explorer - Identifies modules of putative transcription factor binding sites that are software specific to promoters of co-expressed human genes. Provides a resource software for decoding microarray experiments.
• Phenosystems - Software company developing user friendly tools for the molecular genetics community. Provides details of products, R and D collaborations and news.
• Hands on Genetics - Instructional software for basic genetics, such as DNA, PCR, Mendel, software Hardy-Weinberg, meiosis and computer simulations. Freeware for Mac and Windows.
• Genetic Network Maps as Java Applets - Genetic networks controlling development in Sea Urchin represented software as Java biology applets. Formal scheme. Molecular interactions modelled software as Petri Net.

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