Visualization Structural Software Chemistry

A visualization and analysis program useful for the display and manipulation of the surfaces of molecules and their electrostatic properties. Commercial software.

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Review of Molecular Modelling Programs - Reviews, screenshots, and table of features comparing over a dozen freely available molecular modelling and viewing programs.

• Protein Explorer - A web-based viewer for the 3D structures of proteins, DNA and RNA. Requires Netscape and the Chime plugin, which is only available for Windows9x.
• Labquip - Plastic molecular models for constructing polypeptides and DNA structural molecules.
• Ymol - A free molecular visualization and animation program for visualization the X structural window system. Creates images and movies, visualization using either the built structural in renderer or povray. visualization Still alpha.
• Molcular Model Kits - Plastic molecular structure models for research and education in science, software intended especially for biochemistry.
• PovChem - A chemical visualization and illustration program. Reads PDB visualization files and software exports POV-Ray files for producing high-resolution visualization ray-traced images. Available for software Windows, Linux, Mac, and visualization SGI.
• Viewmol - An open-source graphical front end for computational chemistry software programs such as Gaussian, Gamess, and Mopac. Available software for Linux, FreeBSD, Mac OS X, and other software Unices.
• Grasp - A visualization and analysis program useful for the structural display and manipulation of the surfaces of molecules structural and their electrostatic properties. Commercial software.
• VMD - A free program for visualization and analysis of biological systems structural such as proteins, nucleic acids, and lipid bilayer assemblies.
• ChemCraft - Windows-based program for visualization of molecular structures, vibrational software modes, molecular orbitals, energy gradient and other properties software from log files produced by the GAMESS and software Gaussian packages.
• Historical Molecular Graphics - Digitized versions of 16mm movies of molecular structures produced in the early days of interactive molecular graphics.
• SweetMollyGrace - A suite of freeware tools for automating work visualization of rendering and animating molecules. Generates high quality visualization images of molecules from PDB, XYZ, or molfiles visualization using raytracing tools (Povray and Raster3D).
• Molymod Molecular Models - Plastic molecular models for use in chemistry, biochemistry, structural molecular biology (DNA double helix), semiconductors and crystal structural lattice structures.
• Molegro Molecular Viewer - A free cross-platform application for visualization and analysis visualization of molecules and molecular docking results.
• gOpenMol - A free program for the analysis of molecular structural dynamics trajectories and the display of molecular orbitals, structural electron densities and electrostatic potentials. Supports many file structural formats like the GaussianXX, Jaguar, CHARMM, and AMBER.
• Jamberoo: Cross Platform Molecular Editor - Free cross-platform application for displaying, analyzing, editing, converting and animating molecular systems.
• Facio - 3D-Molecular Modeling Software, available at no charge for the Windows visualization platform. Has functions for visualization of biomolecules and results from visualization GAMESS QM calculations, and for aligning and modifying structures.
• OpenRasMol - Provided for the convenience of users and software structural developers of open source versions of RasMol.
• ProteinScope - ProteinScope is a free program to view and create animations of Protein Data Bank PDB files.
• PyMOL - A free and flexible molecular graphics and modelling visualization package which software can be also used to generate visualization animated sequences.
• DTMM - Desktop Molecular Modeller: A simple program for constructing and viewing software small molecules and proteins in 3D with some energy calculation/minimization software capabilities. Run on any PC with Windows 9X/NT. Commercial software.
• UCSF Chimera - Highly extensible, interactive molecular graphics program. It is visualization the successor software to UCSF Midas and MidasPlus. Free visualization of charge for academic, software government, non-profit, and personal visualization use.
• MOLMOL - A free program for displaying, analyzing, and manipulating structural the three-dimensional structure of biological macromolecules, with emphasis structural on structures determined by NMR. Runs on UNIX structural and Windows NT/95. The site offers an online structural tutorial.
• Jmol - Open source molecule viewer written in Java. It visualization runs as structural a standalone application and as a visualization web browser applet.
• Avogadro - Open source advanced molecular editor designed for cross-platform software use in visualization computational chemistry, molecular modeling, bioinformatics, materials software science and related areas. visualization It offers flexible rendering software and a powerful plugin architecture.
• Biodesigner and iMol - A molecular viewer for Windows9x systems with sequence software editor and structural protein builder. Free for academic use. software Additionaly the iMol molecule structural viewer is available for software Mac OS X systems.
• OpenScience - A directory of links to free molecule viewers structural and editors.
• MOLDEN - Pre- and post-processing program for molecular and electronic software structure, with software Z-matrix editor, electron density visualization, and software molecule animations. Available for software Unix and VMS; free software for academic use.
• PyMolWiki - User-contributed wiki to supplement the PyMOL documentation.
• MdView - Molecular visualization software specialized for generating animations from molecular dynamics simulations.
• Santorini and Patmos, Molecular Viewer and Screensaver - Read XYZ or PDB files of atoms and structural display them in a 3-dimensional view on Windows structural PCs.
• RasMol - Molecular visualization freeware for proteins, DNA, and macromolecules. Freely available for Windows, Macintosh, and UNIX.
• Nanotube Modeler - A program for generating and visualizing the xyz-coordinates visualization for nanotubes, visualization nanocones, nanosheets, and fullerenes. For Windows; visualization free demo version available.
• Swiss-PdbViewer - A free program for viewing and analyzing several structural proteins at the same time. Some energy minimzation structural and homology modeling features are also included.
• CueMol - Free molecular structure visualization and rendering program for Windows.

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